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DASMIweb tutorial: Adding new data

Step 2: Available interaction sources

After clicking on the "Show Source Configuration" button you see all the interaction data sources that are available to DASMIweb. The sources are ordered according to their identifier systems, that is, by which identifiers they can be queried and how they return their results (A source that responds to the UniProtKB identifier system can, for instance, return interactions between splice variants of a protein, while this is impossible for a source that returns interactions in the Entrez Gene identifier system). The picture below shows that five interaction data sources are registered with the UniProtKB system. The color schema is the same is described in the basic tutorial: green indicates sources that provide experimental or literature curated interactions, yellow represents computational predictions. The blue background of the FunSimMat source marks it as an interaction quality scoring server.


Tutorial step 02